stlearn.pl.trajectory.tree_plot

stlearn.pl.trajectory.tree_plot(adata: anndata._core.anndata.AnnData, library_id: str = None, figsize: Union[float, int] = 10, 4, data_alpha: float = 1.0, use_label: str = 'louvain', spot_size: Union[float, int] = 50, fontsize: int = 6, piesize: float = 0.15, zoom: float = 0.1, name: str = None, output: str = None, dpi: int = 180, show_all: bool = False, show_plot: bool = True, copy: bool = False) → Optional[anndata._core.anndata.AnnData]

Hierarchical tree plot represent for the global spatial trajectory inference.

Parameters

• adata – Annotated data matrix.

• library_id – Library id stored in AnnData.

• use_label – Use label result of clustering method.

• figsize – Change figure size.

• data_alpha – Opacity of the spot.

• fontsize – Choose font size.

• piesize – Choose the size of cropped image.

• zoom – Choose zoom factor.

• show_all – Show all cropped image or not.

• show_legend – Show legend or not.

• dpi – Set dpi as the resolution for the plot.

• copy – Return a copy instead of writing to adata.

Returns

Return type

Nothing