stlearn.pl.trajectory.transition_markers_plot

stlearn.pl.trajectory.transition_markers_plot(adata: anndata._core.anndata.AnnData, top_genes: int = 10, trajectory: str = None, dpi: int = 150, output: str = None, name: str = None) → Optional[anndata._core.anndata.AnnData]

Plot transition marker.

Parameters

• adata – Annotated data matrix.

• top_genes – Top genes users want to display in the plot.

• trajectory – Name of a clade/branch user wants to plot transition markers.

• dpi – The resolution of the plot.

• output – The output folder of the plot.

• name – The filename of the plot.

Returns

Return type

Anndata