stlearn.pl.gene_plot

stlearn.pl.gene_plot(adata: anndata._core.anndata.AnnData, gene_symbols: Union[str, list] = None, threshold: Optional[float] = None, method: str = 'CumSum', contour: bool = False, step_size: Optional[int] = None, title: Optional[str] = None, figsize: Optional[Tuple[float, float]] = None, cmap: Optional[str] = 'Spectral_r', use_label: Optional[str] = None, list_clusters: Optional[list] = None, ax: Optional[stlearn.utils._AxesSubplot] = None, show_plot: Optional[bool] = True, show_axis: Optional[bool] = False, show_image: Optional[bool] = True, show_color_bar: Optional[bool] = True, crop: Optional[bool] = True, margin: Optional[bool] = 100, size: Optional[float] = 7, image_alpha: Optional[float] = 1.0, cell_alpha: Optional[float] = 0.7, use_raw: Optional[bool] = False, fname: Optional[str] = None, dpi: Optional[int] = 120) → Optional[anndata._core.anndata.AnnData][source]