Tutorials

Main features:

stSME clustering tutorial

stSME normalization & imputation effects

Spatial trajectory inference analysis tutorial

stLearn Cell-Cell Interaction Analysis

Visualisation and additional functionalities:

Interactive stLearn

Core plotting functions

Spatial transcriptomics deconvolution visualization

Integrate multiple spatial transcriptomics datasets

Supporting platforms:

Working with MERFISH data

Working with SeqFish data

Working with Old Spatial Transcriptomics data

Working with slide-seq data

Integration with other spatial tools:

Read any spatial omics and transfer from other tools

Working with scanpy package