stlearn.spatial.trajectory.pseudotimespace_local

stlearn.spatial.trajectory.pseudotimespace_local(adata: anndata._core.anndata.AnnData, use_label: str = 'louvain', cluster: list = [], w: float = None) → Optional[anndata._core.anndata.AnnData]

Perform pseudo-time-space analysis with local level.

Parameters

• adata – Annotated data matrix.

• use_label – Use label result of clustering method.

• cluster – Cluster used to reconstruct intraregional spatial trajectory.

• w – Weighting factor to balance between spatial data and gene expression

Returns

Return type

Anndata