stlearn.spatial.trajectory.detect_transition_markers_clades¶
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stlearn.spatial.trajectory.detect_transition_markers_clades(adata, clade, cutoff_spearman=0.4, cutoff_pvalue=0.05, screening_genes=None, use_raw_count=False)¶ Transition markers detection of a clade.
- Parameters
adata – Annotated data matrix.
clade – Name of a clade user wants to detect transition markers.
cutoff_spearman – The threshold of correlation coefficient.
cutoff_pvalue – The threshold of p-value.
screening_genes – List of customised genes.
use_raw_count – True if user wants to use raw layer data.
- Returns
- Return type
Anndata