stlearn.spatial.trajectory.detect_transition_markers_branches¶
-
stlearn.spatial.trajectory.detect_transition_markers_branches(adata, branch, cutoff_spearman=0.4, cutoff_pvalue=0.05, screening_genes=None, use_raw_count=False)¶ Transition markers detection of a branch.
- Parameters
adata – Annotated data matrix.
branch – Name of a branch user wants to detect transition markers.
cutoff_spearman – The threshold of correlation coefficient.
cutoff_pvalue – The threshold of p-value.
screening_genes – List of customised genes.
use_raw_count – True if user wants to use raw layer data.
- Returns
- Return type
Anndata